Important
The catalogued models are the ones made by Fender for the domestic market some of which were exported but they also made guitars solely for export and except for the 1990s Collectable series most of these weren't catalogued and specs can vary some will be the equivalent of the high end models and some the lower end ones but may not be an exact match.

Fender Japan Stratocaster ST58 range

This range comprises of only 2 guitars the ST58 and the ST58-70TX both from the Vintage Premium Range. The mystery with these is why they exist at all they are virtually the same as the equivalent ST57s but with different colour options, mainly the addition of 3 tone sunburst. So if you see what looks like an ST57 in 3 tone sunburst it's an ST58 if you see one in 2 tone sunburst it is an ST 57 or an ST58-70TX. To give an idea of the level of these the ST58 RRP was 79800yen in 2010 and the TX version was 70,000 yen in 2004

Stratocaster ST58

Specifications
Body Alder Thick Poly Finish
Neck Maple Oval shape 324mm scale
Fretboard Maple 21 vintage frets 184mm radius
Headstock Small Fender 50s gold spaghetti logo 1 butterfly string tree truss rod adjustment body end
Tuners Gotoh Diecast vintage style
Pickups 3 MIJ vintage style (Ceramic)
Controls 1 volume 2 tone 5 way switch All white
Nut 42mms synthetic bone
Hardware Chrome
Bridge Vintage style 5SD diecast block
Pickguard 8 hole 62 style single ply
Colours 3 Tone Sunburst only
Years available from around 2008 to at least 2013 probably later
Replaced by the ST58 Japan Exclusive which currently retails at about £570 (2018)

The Stratocaster ST58-70TX

This guitar was made from 1997 to 2008 and is very similar to the ST58 except for the pickups and colour options
Specifications
Body Alder Thick Poly Finish
Neck Maple Oval shape 324mm scale
Fretboard Maple 21 vintage frets 184mm radius
Headstock Small Fender 50s gold spaghetti logo 1 butterfly string tree truss rod adjustment at body end
Tuners Gotoh Diecast vintage style
Pickups 3 USA made Texas Specials
Controls 1 volume 2 tone 5 way switch All white
Nut 42mms synthetic bone
Hardware Chrome
Bridge Vintage style 5SD diecast block
Pickguard 8 hole 62 style single ply
Colours 3 Tone Sunburst 2 Tone Sunburst or Black in 2008 3 Tone Sunburst only

Fender 2013 FSRs/SEs

There were a number of FSRs across the whole of the Fender range in 2013 to mark the Fender Japan 40th Anniversary. Some of them are far from Vintage specs even though they bear the vintage designation. The one below belongs to Willmunny at the strat forum and is fairly vintage, he has kindly provided all the details. Thank you.

2013 Fender SE ST58 Stratocaster

This appears to be based on a slight variation on the ST58 domestic model. Fender provided the following details to the owner.
Your guitar is a nice Limited Edition 58 Stratocaster, dated May 2013.
The specs. for this model are shown below:
Model Name: FSR LTD Edition ‘58 Stratocaster
Model Number: 025-1503-(500)
Series: Classic Series
Body: Alder
Neck: Maple Soft “V” Shape
Fingerboard: Maple (7.25” Radius/184 mm)
No. of Frets: 21 Vintage Style Frets
Scale Length: 25.5” (648 mm)
Width @ Nut: 1.650” (42 mm)
Hardware: Nickel/Chrome
Machine Heads: Fender® Vintage Style Tuning Machines
Bridge: Vintage Style Synchronized Tremolo
Pickguard: 1-Ply White (8-Hole)
Pickups: 3 Vintage-Style Single-Coil Strat Pickups with Staggered Pole Pieces and Alnico Magnets
This is wrong Willmunny tells me these are Ceramics as I would expect
Colors: (500) 3-Color Sunburst, (Gloss Urethane Finish)
Unique Features: Black Dot Position Inlays,“C” Shape Maple Neck, Aged White Plastic Parts, Synthetic Bone Nut
U.S. MSRP: $969.99 INTRODUCED: 2/2013
COMMENTS: Previously only available in Japan, now available as a Limited Edition FSR in the US, only 252 were made available in the US

Possibly some were released in other parts of the world Europe etc but no evidence of that.